RNA FRABASE 3: an engine with database to search the three-dimensional fragments within 3D RNA structures using as an input the sequence(s) and / or secondary structure(s) given in the dot-bracket notation.

Sequence(s) and / or secondary structure(s)

#tRNA(Phe), yeast (Saccharomyces Scerevisiae) >strand1 gCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA

Search query is required

Parameters

Experimental method:

X-Ray NMR Electron Microscopy Other

At least one method must be selected

Include all models of the structure:

Case sensitive (modified residues sensitive search):

Add through-space interactions:

Strand shift operation:

Resolution:

≤    Å

Resolution must be a positive number

Angles (optional)

#<no> <angle> <min> <max> #all alpha -180 180 #all beta -180 180 #all gamma -180 180 #all delta -180 180 #all epsilon -180 180 #all zeta -180 180 #all chi -180 180 #all p -180 180 #all vmax -180 180 #all v0 -180 180 #all v1 -180 180 #all v2 -180 180 #all v3 -180 180 #all v4 -180 180 #all eta -180 180 #all theta -180 180

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